Scaffold Ga0163199_1006799

Overview

Basic Information

• Taxon OID: 3300013092
• Scaffold ID: Ga0163199_1006799
• Source Dataset Name: Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6462
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163199_10067993	F002085	GAGG	MNPIAPVQNTNNIRVADFVRITTPTSTYRFASTPSALTIPAVDSQPFDALGTLIKVGDAQRDIKSTSNETNFTLVGIDTAMLGFVLGQTVKGSKIESWHGFFNTAGELITTGGSGGLYKFFSGYISTFSISEQWMEEARTFVGVITVSASSSQIILQNRTAGRYTNDNSWQFFTPGDTSMNRVAAITNLSYYFGKGATAES*
Ga0163199_10067994	F000934	AGG	MSLNLILSISESVGINDHRFVGQVVSRNQRLSTSEIVTVVPFGFELKPMNYLLYSQNRPLLNALRIPDKALEQYLNVGATGWINYIKYQGALTNPQVTACQWQTSSENKNLILGNLPSVAASTVIVRIGDFCQVGRYAYIATADVLRGTLSTVTIPVHRNLIETLTAPVNAVIGEFGVTQTLGDSNYNGVTFPVILREFPTYTLVPMTNDSFIQWDGAFSAFEAVL*