Scaffold Ga0163199

Basic Information
Taxon OID	3300013092 Open in IMG/M
Scaffold ID	Ga0163199_1001607 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14108
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14108

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (64.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	50.0621	Long. (^o)	-124.7214	Alt. (m)	Depth (m)	150
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: British Columbia

Coordinates

Lat. (^o)

50.0621

Long. (^o)

-124.7214

Alt. (m)

Depth (m)

150

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006542	Metagenome / Metatranscriptome	370	Y
F022846	Metagenome	212	Y
F036167	Metagenome / Metatranscriptome	170	N
F039568	Metagenome / Metatranscriptome	163	Y
F047595	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163199_100160710	F047595	AGGAG	MDFDIGSNQYRNASDGIEIDGMTQFSFEHNRRYNEMMLRGLIFDQRGSLVAKISENGLAMNLQGEFEMQSEYPVVKLLRRETEDVLLEVKFLDGNHIQIHKARLYTGKGKPFEVTPTLWRLKDETHSGENVDCEGKPVSLK*
Ga0163199_100160711	F022846	GAGG	MPLATPEELGEELSELAFGIIEQNWLKEHIGKAVDVKNLDPMQANAAEWELTYLILFAITSGCGTFSATDRDRTTAALKAFHATFLKQIAEQVGTDIVDAHEKNLVPRYRLYGQTLEGEDTTHPYKTRYQRLGEAAAIQILGKPIEDPQAADIFRETIKVIFTEVREAVIKVMRHQQVAPAQGEA*
Ga0163199_100160712	F036167	AGGAGG	MRRFTITDIMEGNGQPHPSFTHTATYPVLNVLLPGSGNLPGFLVADDQGRFHLIRMDHCRMGKIEAF*
Ga0163199_10016072	F039568	AGG	VTFAKCFCINPVYVNPVYGGGHYKKRNGWVLIDLATRGETNFKTLRDARHHLMCLYMETTPKIIPAAGL*
Ga0163199_10016073	F006542	GAGG	MDETELSELMTAPGFFRFLARQAKLDAEEVKRIYMLGRPWGLWPPDLDVSREAAEAGVDVFTYLAALQPLLDMDTREKEAQLAVYEVTLTGGEAAQLIPAVRAQVEKVAALAKADEATICRVFHALYAYRQRVGRLSIQKVGESSKHKVEQDQAVAIEKLQRALAAEIEQRKNLP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0163199_1001607

Overview

Ecosystem & Geography

Associated Families

Sequences