Scaffold Ga0163209_1024176

Overview

Basic Information

• Taxon OID: 3300013090
• Scaffold ID: Ga0163209_1024176
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_160m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2140
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -2.0288
  • Long. (^o): 29.1756
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098715	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163209_10241762	F098715	AGGTGG	MADTIKVQAMQKLAGVFGAVASIGSVHRWQGSPTDLDRVKLPALFFWDEDESRDKRNRLAMGTLKLYVAIFCRLSPAGAASFNDIADNLQGTIHNALLGTSELQGLVENLQEERVWKEFPNDQYGVLFMSFTLTYAHAWGDAFSTTY*