Scaffold Ga0163200_1244939

Overview

Basic Information

• Taxon OID: 3300013088
• Scaffold ID: Ga0163200_1244939
• Source Dataset Name: Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 560
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Polyangium → Polyangium fumosum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F033040	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163200_12449392	F002269	AGGAG	MNAQLKAAALSYARAAAASVAALYLSGISDPKVLANAFIAGLVGPILKALQPSEKQFGLVKK*
Ga0163200_12449393	F033040	AGAAG	MQVQTWVAVAVGVMAILSGLYAAVRFIVRSIMAEIGPQANGKSLKEQVNRLEARLD