Scaffold Ga0163212_1035062

Overview

Basic Information

• Taxon OID: 3300013087
• Scaffold ID: Ga0163212_1035062
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1737
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006543	Metagenome / Metatranscriptome	370	Y
F011214	Metagenome / Metatranscriptome	293	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163212_10350621	F011214	N/A	VWACESILADGTTLPDMWFYTHIYDSRLVAMEKYMAVYASVHNANDKAIATEAGFKLFAWCDSDQKIAPKRPKRKAAAEVWRKSLPKLVILDGEKFITCPEIRRGRGVVTCTPTKGSVDCNLCVKGLANVLFPSH*
Ga0163212_10350623	F053106	GGAG	MAKYYVKSGTLEVILSQSNALEAAIAGLLLTNKFDTIDEHFYVDERGYRDYVSADPQTNVIATKSIVRAAGWELSREDDD*
Ga0163212_10350624	F006543	GGAG	MQKFAFVVDVVADELDRDSVVDSIRSCLSDSLPDGVHASVKAGEVKAFSEQGYKVWRARVTGVTAEAAGDAANPKKSKKELVEA*