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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013087 Open in IMG/M |
| Scaffold ID | Ga0163212_1026352 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2062 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Malawi: Central Region | |||||||
| Coordinates | Lat. (o) | -13.5167 | Long. (o) | 34.7703 | Alt. (m) | Depth (m) | 45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007310 | Metagenome | 353 | Y |
| F013084 | Metagenome | 274 | Y |
| F018927 | Metagenome | 232 | Y |
| F076096 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0163212_10263521 | F076096 | AGG | MIWYDKEWENPLYWFDKLLTYSDHATLRAFERDIPFIDFLPVHSKFLYHTLKTNIWSLTFETTVNWKTIHIAINTHGVVMTVFPKVISRADEFQYKYKQYLGAFKPPVDYLPTITAESFVDNFEVAV* |
| Ga0163212_10263523 | F007310 | N/A | MRTVLWNETERWFNHHHYELLIEDITGFNLQENLCSESVKYMAKRLKDTPYHRAFRNKYSIYQDEYKTLVEKFNNQAENNGSIVVER* |
| Ga0163212_10263524 | F013084 | N/A | MGILSILELMEETKNTVLSRGHNVKNWLVLGNNCYALECADCKKTVMIKENPLPNEIKVGGEAVAVNCVKPVKEKKLRKK* |
| Ga0163212_10263525 | F018927 | N/A | MNTHIVISRHLAVDGTTTYYVIEKSKNSSCIIWNGTNKQAAYQVAYRNARKENLPLYDTQYRPEVDKNGVKHIIPIGNELLEVNN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |