Scaffold Ga0163212_1026014

Overview

Basic Information

• Taxon OID: 3300013087
• Scaffold ID: Ga0163212_1026014
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2079
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004051	Metagenome / Metatranscriptome	455	Y
F078406	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163212_10260143	F078406	AGGA	MLSTATALIKATEEAIFDDEAMRFAKAFCEHAKDLNEKQFAKSIYVYSGIIASLAVDKAMKVLLSKEQVEELCSAIDELEQIEKEVLGG*
Ga0163212_10260145	F004051	AGGA	MTINGYTYKVGDLFTTLKSKKTGIIKEIVPNASGSVRVLLELPTKETRWTSVSAKSLE*