Scaffold Ga0163212_1023333

Overview

Basic Information

• Taxon OID: 3300013087
• Scaffold ID: Ga0163212_1023333
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2218
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163212_10233332	F002060	N/A	MHLDYTAAVIAVLAAILSGMGTAIVAGIRDNKKEKIRKSEREQDHLKIEVKDLKIELYKIERELTEWKDKYYNTIQELIAVKAELEDTMIKLSYIDHKIHEDLEHLDTEF*
Ga0163212_10233333	F000671	GAGG	MEKILCYSCNKTKNKLDVKKSSLLPINLFICETCSSSKFEPRWVIILAGRSQGPDYVKEHIIKRRYVGNEISASELLV*
Ga0163212_10233334	F011938	GGAGG	VREYYDTVHVVFIHEESCHGTVEQLGAWASIVKYSKDGMEYNELMDNEDFSIIDEISFKHIEESE*
Ga0163212_10233335	F000473	AGAAG	MFINKKDIKEHFKYGINHWTGEPNKPVFYTEEMKKAVHQVKKPSGLLMDIVMYPEFLALRLYEDNFLQFEGTKKEMVIDYVGKVKRLLESYGVRCELEGKPSERVL*
Ga0163212_10233337	F013878	AGG	MLNLTELGVEVFIKKARFVTPFWDNYDLIIWKKNNNGFTSVSGMFKKDAWGTAERISVDSDGIWKLPVKHVRNFK*