Scaffold Ga0163212_1022307

Overview

Basic Information

• Taxon OID: 3300013087
• Scaffold ID: Ga0163212_1022307
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2279
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F074795	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163212_10223072	F000325	GGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSSCDFLGNGCYAEQTEKMYPNVRPAGLQNIITEKNRIRSMILDAVRQGKSIRWHERGDWFLNGQLDTDYVTNVTDACESILASGGTLPDMWFYTHIYDSRLVQLEKYMAVYASVHNADHKAAAVAAGFKLFAWCDSDTKIAPKRPKRKVAADAWRKSLPKLVVIDDTKYVTCPEIRRGRGVVTCTPTKGSVSCELCVKGLGNVLFPSH*
Ga0163212_10223077	F074795	AGG	MTTKEQAIVKILKVLKSPMMVMSVYNRDEALTLAEEYGITVIDLIEVWADLAMRV*