Scaffold Ga0153913_1195659

Overview

Basic Information

• Taxon OID: 3300013080
• Scaffold ID: Ga0153913_1195659
• Source Dataset Name: Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1946
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_47_11 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie, Old Woman Creek
• Coordinates
  • Lat. (^o): 41.3778
  • Long. (^o): -82.5108
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087393	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153913_11956592	F087393	AGGAG	MKKNILMGLCLGILLVVPNVVLAGCTDLGGFTSFSVTGNTVTLHSGTKPFVKFDVRCDIKVQPKSRLELIKSYVCDGDEVLVDGVKCTIFNVTSL*