NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170683_10027811

Scaffold Ga0170683_10027811


Overview

Basic Information
Taxon OID3300013027 Open in IMG/M
Scaffold IDGa0170683_10027811 Open in IMG/M
Source Dataset NameGypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Monturaqui
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJohns Hopkins Bayview Research CORES
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1602
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location
Location NameChile: Atacama Desert
CoordinatesLat. (o)-23.57431Long. (o)-68.10215Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000756Metagenome / Metatranscriptome905Y
F004101Metagenome / Metatranscriptome453Y
F057934Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0170683_100278111F004101GGAVPAALGYNGVVGYRIKAADGETSVDLTDPEWRALVYVASDHGFSAPHLRLEEGEEALDVKAADAEGLRGALGKALEARGVDEIRTPDGELAYDTIQRVRHVLLSGGVRLVRTRA*
Ga0170683_100278112F000756AGGAGGMMDRERPGASELEGKIPEAWVGQEVMIETTEALSSDLRAAAPVCLEGVNDRGIVVLVTRHKDQSRFSRYFYPWGVVGWIRLAEEDERSES*
Ga0170683_100278113F057934N/AGERLTRRRPMTLVRVEETNSGGGFTVLNLQMVARMKCAGYDGRQQEHRATVFFSDGGMVELAGTDADRVLNAMEDFAGYHRS*

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