Basic Information | |
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Taxon OID | 3300013014 Open in IMG/M |
Scaffold ID | Ga0164295_10398598 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1047 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F047054 | Metagenome / Metatranscriptome | 150 | N |
F058143 | Metagenome / Metatranscriptome | 135 | N |
F093863 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0164295_103985983 | F047054 | GGA | MDNTHSQNLIDDNLKYTLRPRIKDRTKVISAALQYVLNHDLVNKKYLEKIVKELEEMNE* |
Ga0164295_103985984 | F093863 | AGGAG | MTNLINKLLARFGFQLVYIKPNVSLVEASVKFLNENPKFVSDQVKPNDFYLGDINYVQKRVNGEFPQVSGETYYISQSEKYFCDYNGDENVPFEKMYEATTFTTEQLQNKLK* |
Ga0164295_103985985 | F058143 | N/A | MILERTADLQILTDDKQTYYRISYNDEFQYVSWFRREYGILYPVDTELYDILTKKYFEVSK* |
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