Scaffold Ga0164295_10398598

Overview

Basic Information

• Taxon OID: 3300013014
• Scaffold ID: Ga0164295_10398598
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047054	Metagenome / Metatranscriptome	150	N
F058143	Metagenome / Metatranscriptome	135	N
F093863	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164295_103985983	F047054	GGA	MDNTHSQNLIDDNLKYTLRPRIKDRTKVISAALQYVLNHDLVNKKYLEKIVKELEEMNE*
Ga0164295_103985984	F093863	AGGAG	MTNLINKLLARFGFQLVYIKPNVSLVEASVKFLNENPKFVSDQVKPNDFYLGDINYVQKRVNGEFPQVSGETYYISQSEKYFCDYNGDENVPFEKMYEATTFTTEQLQNKLK*
Ga0164295_103985985	F058143	N/A	MILERTADLQILTDDKQTYYRISYNDEFQYVSWFRREYGILYPVDTELYDILTKKYFEVSK*