Scaffold Ga0164295

Basic Information
Taxon OID	3300013014 Open in IMG/M
Scaffold ID	Ga0164295_10067286 Open in IMG/M
Source Dataset Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013014 Open in IMG/M

Scaffold ID

Ga0164295_10067286 Open in IMG/M

Source Dataset Name

Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2674
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2674

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.008

Long. (^o)

-89.701

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016144	Metagenome / Metatranscriptome	249	Y
F017607	Metagenome / Metatranscriptome	239	Y
F075700	Metagenome / Metatranscriptome	118	N
F100476	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164295_100672862	F075700	N/A	MIVEENLEGWNNIPVKSKEVIYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKP*
Ga0164295_100672863	F100476	AGAAG	LDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIDDYNDDLLIMKMDELKTDLNHSKDYKLYKEAWKKFIHCKDIDELDDDELKLLYNYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNANLLALFKFADSDTVLEDVYPLFSAFIKEHEFKELYEYSTKEPFNALVIDATRGKPIFKKNFDKVLHIS*
Ga0164295_100672865	F017607	N/A	MNIDSVYFKKKDIVNSREAFNELEKIRLKAKPTKKNLILDPSNIPPNMMNTIRNNNAFEDEFWRTHNKYKLTPHIDFKPKYTPPYYAPQETGYGSFNYESFVQNLKRI*
Ga0164295_100672866	F016144	N/A	ERFSISTQSLDYVLGTFRLPGYETIGQPLNTIFSTQNSLEEGQTRATAEEQINAGLRRVYNQSRYFAHNGDSIATTKWRIGNNTFEPQNIDEQYNSLLQHFNIHQDTLSGMHPCINSIGAFREHSYASICSLNFAEKGSTFTVSGLDTEQTPASIEWIVTTNGDYTPAGGLAGNYAITNGNNCLPYIICAYSSHLEIAVGRMVNLIP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164295_10067286

Overview

Ecosystem & Geography

Associated Families

Sequences