Scaffold Ga0164295_10045142

Overview

Basic Information

• Taxon OID: 3300013014
• Scaffold ID: Ga0164295_10045142
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3320
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F082149	Metagenome / Metatranscriptome	113	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164295_1004514210	F082149	N/A	IDWCIGRWFGRNNNLEIRFTLPTISLGYKNEDDNKWLGFKFNLRTDISFESYEYGKIFTLILFGFGIKLSKFYI*
Ga0164295_100451423	F024040	GAGG	MNIYVTGHNWLAKVDIDSQKIDKSNWYNEACTRAVESVLDQEEKEGVDLKIQDYEDFGLGVILLTWDEKNSKNEDQHRVLLTSNVLANAGRWKEYKFVKDYEEKAKEEGL*
Ga0164295_100451425	F104483	GGAG	MKKKIIDKIDLVIEDIINIQELIDFDTTDSSEYDLDSVVNLLAEIRGKVSNQEEEVEKIDLKEL*