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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013014 Open in IMG/M |
| Scaffold ID | Ga0164295_10034495 Open in IMG/M |
| Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3849 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001561 | Metagenome / Metatranscriptome | 670 | Y |
| F008552 | Metagenome | 331 | Y |
| F024557 | Metagenome | 205 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0164295_100344951 | F008552 | N/A | KKYLQLYRRDGKYHPYKFFAIFFILENLTITRYNMSVMIISFEASASVDSTLFGYFSMEYDPEFFSDIRENLTEIPKNKPLAFKLDIDNVKLLQGAFHNIRRIICIPDVEKNKFTYVFKRNFETGTAKKFKFAKLHIDKDYFYFTGHHENVDGTKPVEFQSLNFDARFIDTIQNQYIKHQESMVN* |
| Ga0164295_100344952 | F024557 | N/A | MNSHVWIYFSKTGVGYELTGTDVISGFDAFVHSDGTYLIEYSYSDLMSDMHFFIYEWDNSQKKRKTVFESYKKELVLMGMVKHMDKIPLPIAQKILSMYVNDNEELELEKNANS* |
| Ga0164295_100344953 | F001561 | GGAG | MQTREQKLVYLRKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNSNGYRAYEYVGQFYRIMYVDLRLAVRYYESAIRWKDAPLSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYTKSKLEVLTKL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |