Scaffold Ga0164295_10020441

Overview

Basic Information

• Taxon OID: 3300013014
• Scaffold ID: Ga0164295_10020441
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5107
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021537	Metagenome	218	Y
F060908	Metagenome / Metatranscriptome	132	Y
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164295_100204411	F021537	GGAG	MQTREQKLVYLKKTIETLWHGVSDTKEGDYPRIIGLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAY
Ga0164295_100204412	F103253	N/A	MEEKVWIYLAKTGTGFELKGADIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNILTGFAKNVDIPENLKLAIFKNYTFDEEDLELEKNANS*
Ga0164295_100204415	F060908	N/A	MTRKLDYTVSESITTQSKNRIQIPKKYASYIGLKEKFVAHVTNLNGSYVISVCPTPESKKYMVDKDGAIRFPVQKNEYKIMIADSVVVIL*