NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169969_1019647

Scaffold Ga0169969_1019647


Overview

Basic Information
Taxon OID3300013013 Open in IMG/M
Scaffold IDGa0169969_1019647 Open in IMG/M
Source Dataset NameGypsum rock endolithic microbial communities from the Atacama Desert, Chile - Monturaqui
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJohns Hopkins Bayview Research CORES
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1770
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location
Location NameChile: Atacama Desert
CoordinatesLat. (o)-23.57431Long. (o)-68.10215Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082231Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0169969_10196471F082231AGGAGGLPEAATKPGPCQVRSKTESPCPHLAVVEVRGIPFCEACAREQEAYFAIGELTQEVRRLRGEPLAGALGRTRRGRTGGIAADRRLALPGVDGPERLTITKS*

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