NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0169965_1018031

Scaffold Ga0169965_1018031


Overview

Basic Information
Taxon OID3300013012 Open in IMG/M
Scaffold IDGa0169965_1018031 Open in IMG/M
Source Dataset NameGypsum rock endolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJohns Hopkins Bayview Research CORES
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1699
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location
Location NameChile: Atacama Desert
CoordinatesLat. (o)-23.53976Long. (o)-68.68737Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051097Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0169965_10180311F051097N/APAVWDSYQNVVQNLREKGLTEGITITSYYEDRQGETYQTTWTINPLLLEGSGYSDYKGYEDEVQALQDQARALEKISQDLDEVKEAINHRRDGQVN*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.