Scaffold Ga0169965_1000014

Overview

Basic Information

• Taxon OID: 3300013012
• Scaffold ID: Ga0169965_1000014
• Source Dataset Name: Gypsum rock endolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Johns Hopkins Bayview Research CORES
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91798
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (75.28%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location

• Location Name: Chile: Atacama Desert
• Coordinates
  • Lat. (^o): -23.53976
  • Long. (^o): -68.68737

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007445	Metagenome / Metatranscriptome	351	Y
F027007	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169965_100001487	F007445	AGGAG	VKQPADEIGVECPSCHRAVEARDENGLVDALWGHLAEEHQLEMPRERVRENVAAQLRGVDGYNARPISGA*
Ga0169965_100001488	F027007	AGGAGG	MPDRNTKESKLLALMVNDLGIADIEEAEAARMRREISNLPDDELDKTLATRLDLPRPVDAEVLDRALSRVEEPERLSDEGGFTGAPDMSHEPRPEER*