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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013010 Open in IMG/M |
| Scaffold ID | Ga0129327_10009877 Open in IMG/M |
| Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5254 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 37.1043 | Long. (o) | -76.1811 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007343 | Metagenome | 353 | Y |
| F019151 | Metagenome | 231 | Y |
| F031530 | Metagenome | 182 | Y |
| F033836 | Metagenome | 176 | Y |
| F066845 | Metagenome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0129327_1000987711 | F066845 | N/A | MEQELLNNRKKAIAMHNAGKKRFADIFTGCLAHGTLKQTQKKKACFKLKKD* |
| Ga0129327_100098773 | F019151 | AGGA | MIIANARARDGLELFDNDGVQAFEMKNETLKMCADEDGALWNSVRSLTLRDAEGNALFSLSWSETGVCGSLHDDELTIEIEEEF* |
| Ga0129327_100098776 | F033836 | N/A | MGKLMTISEYEFFGVVYNENAKDTRNTVGEGVPAVREQEEGTSTKEERFIDMVNETEVKSAAFCALALLAGLCCALLLGCKTSAKVEGGAEIIELKPLKMQELTYPMYDYDKIC* |
| Ga0129327_100098777 | F031530 | GGGGG | MIMDFVIYKSESDNHGRLVELVHNKHCEVYEVVVDGIPVFNSNDYQTAEHEYNMECV* |
| Ga0129327_100098778 | F007343 | AGGA | MRVSDLQPAAYPQSPSVEKPNSDAHALFTNDFNKSSFIEANGDVEIVWNNQYRYWEVPAFAESRAAYGIAKQRACDTWGSE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |