Scaffold Ga0129327

Basic Information
Taxon OID	3300013010 Open in IMG/M
Scaffold ID	Ga0129327_10002605 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013010 Open in IMG/M

Scaffold ID

Ga0129327_10002605 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10495
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10495

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.1043	Long. (^o)	-76.1811	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

37.1043

Long. (^o)

-76.1811

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003169	Metagenome / Metatranscriptome	504	Y
F003920	Metagenome / Metatranscriptome	462	Y
F004715	Metagenome / Metatranscriptome	427	Y
F018079	Metagenome / Metatranscriptome	237	N
F021539	Metagenome / Metatranscriptome	218	Y
F021862	Metagenome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129327_100026051	F021539	N/A	MNKKLEWLIIIFLLVILLGLSACSPNPHPDKQSPHETKDEMQSKITKDMEAMDKENAQQDTPGPTNFEGIVDALGCMFAPDDCPLKQRNEEQKMDR*
Ga0129327_1000260514	F004715	AGGA	MIYTDQEHEWLSRPAKKKRVSNQTADGQAPQEEDDRLWQRCWGIRTTIEVDGKTYTVPIQL*
Ga0129327_1000260515	F003920	N/A	MLTCALAFHDNTFAVFELKEELQIRYMNMWELFQQLEYVTDEQRVIVYEEIQHIRSEIQRIVDELIQHDQSQHP*
Ga0129327_1000260516	F003169	GGTGG	MAMIKYPLYKKNNSRKNTLLYPGLTTVSFDRIITYMQYYYVMCQKGSVLHRCYVQLDPESADILHDSLEQRYDLVQVCAVPRNSVEPDIVIAPAP*
Ga0129327_100026053	F021862	GGAGG	MFARLRGWFETYKQSLFDSYDPPKPTIYVLGKKKFIKKKVLNRPKGHKGPYLK*
Ga0129327_100026054	F018079	N/A	MYTLEKRKMIYIMSRKPVWYHTHCLTPNNKLPLWYDPTWVMGECDLCAMSIMNQDWWNGCSYNTSQKKFYDQIDQELKLWK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129327_10002605

Overview

Ecosystem & Geography

Associated Families

Sequences