Scaffold Ga0167616_1008418

Overview

Basic Information

• Taxon OID: 3300013008
• Scaffold ID: Ga0167616_1008418
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1895
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022018	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167616_10084181	F022018	GGTGG	MAEAEDVVGMVMSGYGIYLRQVSETPWADAMDSIDYLEDFDDLNDSELIDTLARWAGRSYKDFKGIWDSLSKEEKERALGEIEYEIAVIGFESLLKGIAADFDVMENKDIRERIINAAKRYLNGEIDFYDLAEELENIFWPTEEDRKKYEEGLRHFWDGIGLTDYIEENEIKEMVKRYLIEELEAIGKTSDLG*