Scaffold Ga0164294_10596907

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10596907
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 749
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F020171	Metagenome / Metatranscriptome	225	Y
F025671	Metagenome / Metatranscriptome	200	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_105969072	F001460	GGAGG	MLGYTESDLNKMINAIHDSKLFYLRYPSDLMDKTELRNDLEMAVSFLQGLWAEGYFD*
Ga0164294_105969073	F053291	GAG	MITTQELIDYIYDENLIHFDDRDTSDDCDCHIHITLQTMIKYMEAMEC*
Ga0164294_105969074	F020171	AGGCGG	MAEQFIDTIAEHITGAIQQEISEHLFDQWSAKNCDEGPDYAEHMFMQWASDDLKQKYNEYYGYIEGDEFLL*
Ga0164294_105969075	F025671	N/A	YCEDDCGEFCSECNQGSWQDEEAMKECQTHMVLLPSTEKAEV*