Scaffold Ga0164294_10132734

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10132734
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1816
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F027777	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_101327342	F005846	N/A	MTSFPLPARPVGSAVPALHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRQGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNFQNNRAGEVVWEGFVMKALDDGKYPYITNPSYCSPAWQKQRIRW*
Ga0164294_101327343	F005702	GGA	VIIFLVVFFGLLILQGVRLFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEPELLLPSKNWVGRN*
Ga0164294_101327345	F027777	AGGA	MSEELPTFWHEEPANKKRPNETTDEWVVRVFGAFPDTEFDQRNDFRCLNLPRTAKENAEGFGIFDYGQDKQ*