Scaffold Ga0164294_10094429

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10094429
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2226
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F027417	Metagenome	194	Y
F029046	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100944293	F001477	AGGAGG	MSNIYTIHPPKSELILFYEVTTPEGENEWGGANAEQAMQWLSLAPAGSRILVSAWDSDEEDAHLVGQSIDITDIVKAASL*
Ga0164294_100944294	F000821	AGGAGG	MNAEYLQAKFDLCINQAEKDLQEQEIARAIKNLQRANSAMSRLFGIEEGEADE*
Ga0164294_100944296	F027417	AGTAGG	MGYNYRVTFVTDYLTIITNVELELGDTMGNCSGEAYNQATINAMNNIEDQIGKIDETIINDITVTLILDDEEIELGEEE*
Ga0164294_100944299	F029046	GAGG	MNLAEINTLQDLKVWVEENMPNATVYEDMWGTLVIRTNLVSTMGGYLHEKEAEDE*