Basic Information | |
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Taxon OID | 3300013006 Open in IMG/M |
Scaffold ID | Ga0164294_10086752 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2343 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004723 | Metagenome / Metatranscriptome | 426 | Y |
F018713 | Metagenome | 233 | N |
F024743 | Metagenome / Metatranscriptome | 204 | N |
F058129 | Metagenome | 135 | N |
Protein ID | Family | RBS | Sequence |
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Ga0164294_100867521 | F004723 | GGA | MKKGDKFTHTDIVGRKYEVTYTGTRRTVKDCEFEFFVDDKGDSCFFTDTEIKKMKRLEE* |
Ga0164294_100867522 | F024743 | AGG | MNEAQLYNLYSQDSSAYNEGKKAQDLIIIMNVLHLRLEHNMPLHKIAKRCGIKVNKVKLILFNYENNLTKK* |
Ga0164294_100867525 | F018713 | N/A | MTPDPNLWREIPQEVKDAAILLGNYFKKKGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVGEGSDMETIICGLENSKKQFLNECGDGIDYTKSF* |
Ga0164294_100867529 | F058129 | AGTAG | MLLLLLNGINNMNVYLVYNNSDRDGGVNAIFDTDRKALDFVIKEYYSAPYFKSMDSYSLDKLAREYVVKMKV |
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