Scaffold Ga0164294_10086752

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10086752
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2343
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F018713	Metagenome	233	N
F024743	Metagenome / Metatranscriptome	204	N
F058129	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100867521	F004723	GGA	MKKGDKFTHTDIVGRKYEVTYTGTRRTVKDCEFEFFVDDKGDSCFFTDTEIKKMKRLEE*
Ga0164294_100867522	F024743	AGG	MNEAQLYNLYSQDSSAYNEGKKAQDLIIIMNVLHLRLEHNMPLHKIAKRCGIKVNKVKLILFNYENNLTKK*
Ga0164294_100867525	F018713	N/A	MTPDPNLWREIPQEVKDAAILLGNYFKKKGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVGEGSDMETIICGLENSKKQFLNECGDGIDYTKSF*
Ga0164294_100867529	F058129	AGTAG	MLLLLLNGINNMNVYLVYNNSDRDGGVNAIFDTDRKALDFVIKEYYSAPYFKSMDSYSLDKLAREYVVKMKV