Scaffold Ga0164294_10067017

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10067017
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2731
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027400	Metagenome / Metatranscriptome	194	Y
F061646	Metagenome	131	Y
F061649	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100670172	F027400	AGG	MTNLEIQQKLNQAQELLSDVYHWASTPMTNGLQVSPLETNAEITSLMSCADGCIGEALNALEEMTA*
Ga0164294_100670174	F061646	GAGG	MKSRFIFDKVNQDITASITREMEKFPRARDAEPTYDDLICALIFIVLIVFMTFL*
Ga0164294_100670176	F061649	GGAG	MRDQTDCHYPHTRLCLQDCEDGCRARKTVWRKRTIQEMEDQELEDEEFRKIPQFTYECKHLGVCMDRPSHCLDCPSNNA*