Scaffold Ga0164294_10026260

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10026260
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4702
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004669	Metagenome	428	N
F015209	Metagenome	256	N
F024112	Metagenome	207	Y
F059958	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1002626011	F004669	N/A	YIDMENTTMKLWEIKNFQSASVKALFVGQTANGQDCIACAWNSSELYVFAYEGIVDTFLWALEMFQSVGQAMAYAKLRNDFEDRRYSLPYHETMEQRTHNQLYMFQLQYLHIHEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSKLVNVLRNREVCA*
Ga0164294_100262602	F059958	N/A	MSYNETSLKEIAMATKTSLTTMDAVKKLMEFNKLYNTIVTATVNEKNALTQAEWALEDAKFEILRTVDVKELGSNSEQREAKLSGMLVEQVKVVRSTTLRYELMKAEEQKCRANLEFAKHLVRASEALTEA*
Ga0164294_100262605	F024112	N/A	MAYTIGVRNKEMKIQDYDKERATVLNALYCSVRSAIQMENLHNNTRIEWIEDDFKVAQKKLEAIEAEMRVLLGDPFAEEVK*
Ga0164294_100262606	F015209	N/A	MNSYRHKALSLWSNLLAEERWHKFENTNCKPSCKGWNGWAPYCECFENHCTFVPKGDIEDIELVIVAKPIDDVLRNIQIIP*