Scaffold Ga0164294_10024790

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10024790
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4853
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F026210	Metagenome / Metatranscriptome	198	Y
F048101	Metagenome / Metatranscriptome	148	N
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1002479011	F026210	GGAG	MSPILGANPLDYDATYPQVAESANDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEAIHFVEDTI*
Ga0164294_1002479013	F066486	N/A	MKNKTLSKNDPYYLKIGKFKKKSVYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYALIKGLGEIKSKKK*
Ga0164294_1002479015	F048101	AGGAG	MKKKMKMKKFKTIKDYLETCSEDEKEFIYDIYFDMSVDDLVEIIFGNLPPDDVIQEIEEYREEMEWDDNEAEKSNKSKRKCDCDFVGCQGC*
Ga0164294_100247904	F011914	N/A	MITNNQIKAFDENELAYLYYCCKTEWDSKNMGYEFDWYVMKVFKNNVIHKLLDKYSANLTDENKGLIMQILNKLEQNI*
Ga0164294_100247909	F071966	GAGG	MLSLLGSHIDYKGYIFKPFYLLLGVLYFVVLLALLGSLYVILYIRNTLEIVLKDIEKNRKKYKRLG*