NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10022783

Scaffold Ga0164294_10022783


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10022783 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5086
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F012219Metagenome / Metatranscriptome282Y
F031872Metagenome / Metatranscriptome181N
F033435Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_100227832F001733GGAGGMNSISIKRLVVVVIVAFTAAFTSVFGDGVRTSEAHDIAELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQANAMKVGK*
Ga0164294_100227833F012219AGGTGGMNLQNFRIEKEPAPSTDWRVYGDIFDDSGIQIGTFGRDGTSVNIWWVQQDEQFQYGIVQQFAVIMAQQIASGDAE*
Ga0164294_100227837F031872GAGGMVESLVVDEWIYDTLRADATLQGLLTVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDNGQDDTTAMCGGRILTSSVHQVWCWDTQSGAVSMARIKGIVDRIDTLLNRQTVNSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV*
Ga0164294_100227839F033435AGGALSNSIFDNIPKIEGRPNYTVDIERFIGAPGAFVFREPKASDLFPRPEVEKMLKIAFPEFPAQMLQILMIMARCYVTQSGDGEINPARRFAQLARDRSDIYLYTVGEFARAFPIDIEAAVDEIPND*
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