Scaffold Ga0164294_10022577

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10022577
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5111
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F012977	Metagenome / Metatranscriptome	275	Y
F033041	Metagenome / Metatranscriptome	178	Y
F082677	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100225771	F082677	N/A	MKQEDKFNGLSKGQVKQIIRRNMITRVKTSNKVYDRKREKRGLASDD*
Ga0164294_1002257712	F012977	N/A	MKEFGFVKPFSYINIIIKVMENTFIYNLSDTEYLVFKSQRDRFELFSRHESSSVNSKLATYKGGKWYFEDFHQQKLFWFLFNIYKKDFGKALKQYIRSLQDKPKTYIVTCAKRRFDIKITKMKRNMWDWVYGTFYGR*
Ga0164294_100225772	F033041	AGGA	MEKIKINTNFKFTFDSDVELRRAQSSGYIESYDMVRICVKRLDNGNQVDFPIKTREDYFDQVASLNERFNEYDMVEIYQDTHLFDMYDYI*
Ga0164294_100225778	F011488	N/A	MTNEELIEELYHKAYAKGFFHELHDKVKELQTNKQIKYGHELVRVAYEDLKKIKLSQPTP