Scaffold Ga0164294_10016217

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10016217
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6118
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019470	Metagenome / Metatranscriptome	229	Y
F054041	Metagenome / Metatranscriptome	140	Y
F072350	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1001621714	F019470	GGA	MTITVREMMEALGKLPSDAELVVTESGYYSYGEFADIMLPELYTPETEEIVPGNPIYRIGHSHQSY*
Ga0164294_100162172	F072350	AGGAG	MQDYYKAKYTYDYDDKRMRYDVTEWGNPVNGVRLGKVVFYSDVEEECIAMAEEYNYNYKCGQEWELFNNQECEFV*
Ga0164294_100162179	F054041	AGAAGG	MTVLFTCGHKAKDDEDGWTISTKAYTRENNRAVDYRTVCNNCYLVYEMEELVLFGEADVAKWLDGE*