Scaffold Ga0164294_10015592

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10015592
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6249
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017289	Metagenome / Metatranscriptome	241	Y
F017294	Metagenome / Metatranscriptome	241	Y
F018002	Metagenome / Metatranscriptome	237	N
F019103	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100155921	F018002	N/A	TRRRSKKQMNLDSQFSAHEAVCAERYDQINARLKRIEGILIKTAGVLIFSMSAIVYASLTLHR*
Ga0164294_1001559218	F019103	N/A	MNKTSVWTTGYKPTKEDLKGLCNYRYETAGDLVLDCYLSYEAEERETQDEPGTPAVMELIYALVEGVDISVMLGDWAETIEDAALGDLAEQIDDAAFDRGEE*
Ga0164294_1001559219	F017294	AGGA	MSRQIHLDKSGSGMASKTACGRNILRTPLSVNWAGFKQESTQNRCIKCATSKQFEVNTRMDARKAA*
Ga0164294_100155929	F017289	GGA	MKTKQEIKEEIIELYGATQALGDAMNILHAKRMEKSKQMMALSHMLTEMGDEPKGEGT*