Scaffold Ga0164294_10012531

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10012531
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7016
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014487	Metagenome / Metatranscriptome	262	Y
F026867	Metagenome	196	Y
F031026	Metagenome	183	N
F033352	Metagenome / Metatranscriptome	177	N
F035218	Metagenome / Metatranscriptome	172	Y
F042872	Metagenome	157	Y
F048834	Metagenome	147	N
F072095	Metagenome	121	N
F079786	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1001253111	F048834	AGGAGG	MAIPGVDWAAALDAYVAGDREEVVPPGWFTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIRIKICDRGSKVGYCRRVPHYRLTPAKSRKN*
Ga0164294_1001253115	F031026	GGA	MLGGRIALLLISAFALCSCATTQTQDGPPPSPDSISYFIYQWDKAERTNKPCPQAYRDLYAQALKALSDSLAETERERARQ*
Ga0164294_1001253119	F014487	N/A	MPLLLIALLLCSCSPRPAENTALPNYDMMQAAEDAGKAK*
Ga0164294_100125312	F033352	AGGAGG	VSEFRLIENIEVLACRNSAERVVKALNRGEIDQAKQLARKHEIAWHVTDREFQTLNQPHRNNDFCDDE*
Ga0164294_1001253120	F035218	N/A	MKMYRVGLAGSYTKVTGTGGVASIGNTGGFNINLNAGSAANGTSKAGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGAEFALQSGVIQARLIGFNSSYLTPTSYTTLTNGFGLASSDNRFFGAVIESDGAGNIYLYGADSQTNPAINIGQTPLLTLTGGPTNDTSTNRFGPEIHCSNSSSLPTSSPSAILQSTHWLLDVQ*
Ga0164294_1001253121	F079786	N/A	LTVFNEGAGNLFISPGATATTISYQVRLSAGDYWECPEGQRSLIHTAVFATAGTARVTEVS*
Ga0164294_100125315	F072095	AGGA	MIRDLEKEGVLPATASQSYGSAQLSQTTALIDLQTKHRDLRNRLERIEDILKGLIEKQVASL*
Ga0164294_100125317	F042872	N/A	MSPQSIIDQIESGNCTVGSNPTPSEAYGYNDLRRNGNTAVITEPKKQHYQQHSLLIRGGYPAEPAYHPNPSVARMWSAQR*
Ga0164294_100125319	F026867	GAG	MNSVRLNDTAMNLRKQDRALSLRQLGAAYGLGYVRIKQMRALSGFPLVAGKVIPSDFDQWRLAHTGLNLPRPADRLRSAAGKAHALASRSDSRVSWQRIESSLKAAVGSLGLPEGNGSSDS*