NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10011301

Scaffold Ga0164294_10011301


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10011301 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7425
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F039139Metagenome164N
F054860Metagenome139N
F060908Metagenome / Metatranscriptome132Y
F103253Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1001130117F060908N/AMTRKLDYTVSESIKTQSKNRIQIPKKYASYIGLKEKFVAHVTNLNGSYVISVCPTPESKKYMVDKDGAIRFPVQKNEYKIMIADSVVVIL*
Ga0164294_1001130118F039139N/AMSMFLNAFEFTSEDIVTILRAHDTDITIQQLAEIHSQLDHDSIVRSALQYDDPNMQLKSALSQAEDLMIMDGLYITEPKKFHIDD*
Ga0164294_1001130121F103253N/AMEEKVWIYLAKTGTGFELKGADIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNVLTGFAKNVDIPENLKLAIFKNYTFDEEDLELEKNANS*
Ga0164294_1001130122F001561GGAGMQTREQKIKLLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMMVDERLAIRYYESALRWKDVPATTFHSLTSLYLKNGDKVRAIGNCRFNLTRF
Ga0164294_100113018F054860AGAAGLNVTLKNTRINHLNSEETLAFNALLCNDKIPFAEVSNDGRGGENRYRPLGDSMDWIFNHAIVTAFREWCSNQPPIYDKESGNIYNFSADIFVNDCLTEHIGNQRELVVSL*
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