Scaffold Ga0164294_10006726

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10006726
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9845
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F005348	Metagenome / Metatranscriptome	403	Y
F005531	Metagenome / Metatranscriptome	397	Y
F014849	Metagenome / Metatranscriptome	259	Y
F018352	Metagenome / Metatranscriptome	235	Y
F023275	Metagenome / Metatranscriptome	210	Y
F097334	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000672615	F005531	AGGAG	MTITYSLWQGYSLLSINNTAKNADELLEVMNDLNKLGKDFSYNIMKVEVA*
Ga0164294_1000672619	F023275	N/A	MGFLDNLETSMADDDGMPSKKVTDAIKEMLEDPEHHKLMERLKYMEEHGI*
Ga0164294_100067262	F003393	GAGG	MINLQNDDTIALMDYYKVDILTAGQLMVDDCILVGDEVVSIVDIVSLPDGYTLEVINDFGEREIIEVGEYDQFDLMMLQ*
Ga0164294_1000672627	F097334	N/A	MPDVLLNNDDITVLGPPEVVELSLDIGATGTRGSQTFVGVGNPNTNEIGQTPLLNDLYINTSPGADYGYLYQYVSQPGGNTWIEVLKLNPTIYSKNYLTTYSDGEASIVVPIDEIITSTATPLTAENFSVQFSVIHDNPVAASMSIPALVGNGDNLIINFKAVEHRKSIDSGPYGDWAVLEGQVTTHLFITIVDEES*
Ga0164294_100067264	F000808	AGGAG	MEYTYSLTTSYDGELVNTLRVSDMLEAVNAWDKCVDYGTAKEYATYNLSDLTGKMYTKTFYANGEVVIK*
Ga0164294_100067265	F018352	AGGA	MGKFKNTLMEILAHDECYGAGWQFTGNAIDYDVWACECNPYNVPADEIQEYHQLFNTKENA*
Ga0164294_100067266	F014849	GGA	MLTNLDLLAIIIALCGSMLVMFLFYKQNVAQQKEIRRLRNELRKALKV*
Ga0164294_100067268	F005348	AGG	MISSVMSFDCDECNGVGLIFWGNDLDYDVEKCDCNNFAIGNLFTSGEAN*