Scaffold Ga0164294_10003481

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10003481
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13968
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100034812	F009669	N/A	MLSKIFGANWRSSTSGVTTVVAITTAIAIHSDPTLVAFLPDIAEVYIIGISKLIAVVSGIVFALTVKDAAVTGGTVAQTSEAEKRTGENI*
Ga0164294_100034813	F014229	GGAG	MNKLQLAAVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQATSGNDRIEKAKMINNVAAIVEALTVGTAPTPAQLQKALNDYLPSEKTHWANYVTVIKDLYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE*
Ga0164294_100034814	F091423	GAG	MPTGILTAILSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSGIEHAVKDKDLEEARKHISS*
Ga0164294_100034815	F010817	N/A	VTPNKIQDDKSSYDATTPKQYDKDNGGLISFIGDDALITRQARERYNNLIKMYRIKFKKEKAIDLNEDSGVKPYKDTFGNELFLIDSEHLVYFGVLNSWLKEKVSQDNIIDKTIDKINN*