Scaffold Ga0164294_10003266

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10003266
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14469
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F030060	Metagenome	186	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000326615	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYQGVFELTSYVKAGHRQGDIIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPESYNLVAPFGLSQGYYRNPLELIVGARQAMGKDNFFVLCPADIKIQGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKNEWETDNIFSFEGMTAMD*
Ga0164294_1000326617	F030060	N/A	MTKGIIISESPEIHWEHLNVAGGRVLDLGCAFWTEAERQEANGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAPQMNTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDTWLKEFIAWFDSIGFECYRHNSVSFCPEISVIYGRLKC*
Ga0164294_1000326619	F003049	N/A	MKNAKQIIGCRKQKSGENTRGLGIIRFGKSRPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKESVIQYVIVKALTGYAKCKK*
Ga0164294_100032663	F093768	N/A	MPLLPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEQLVLVAELQKPIAGNNITVNYTANGVVISLAGFSS*
Ga0164294_100032666	F025225	GAG	MMSIELLNHDKFVLRLQQYQDASRKNMARVINDKLGDVAVTAIGTTYRTNTAKIASEIQRVEGQIVTRKVFKPFGLTKSGKIKKRKIGEYAVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKEGVGGLGMGGGKPGTIGALARRLVAGRKRSINYIRNGWAAAAAVFGKRAKLTRGDYSEEAIKRLGGGTKAESDKARMQGMIFNRAGDLDTRYYPVRKRAISGAVAVGKPGLEEAVEKVMADMAVYLARKNKESSDKLKL*
Ga0164294_100032667	F019102	N/A	MSISLDEELNSAFVAPDKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIDGKTEADRDAATNIVSNMIEEASKGRVEIIPTPNSPDLGNA*
Ga0164294_100032669	F006138	GAGG	MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS*