NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10002720

Scaffold Ga0164294_10002720


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10002720 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15806
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F011208Metagenome293N
F011649Metagenome288Y
F019469Metagenome229Y
F073257Metagenome / Metatranscriptome120N
F082352Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_100027201F019469N/AGAQIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMVHLWNVPVQELDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMPKLIEQIKSDDAKLVELGR*
Ga0164294_1000272012F073257GGAGGMNKVKFRWGEETYTLCVTQDDCWLEDGPSDISDRMLKGMDELAMENGMLPPKGLCAECWKGTYEAIVEDYHIGGETIKDLDLERCPRCRHTILPWQSVERVDKVLEALKKPVELCPTCRKSNTVEFTGDLKMDSVCKLNGEPFTAPNITRTQCPKCKDEFFFMSECEKIEAAIQAEQKRRGLK*
Ga0164294_1000272019F011208AGGAGMTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWDKWRATNGKPAIKH
Ga0164294_1000272022F082352AGGAMSKIKTPDDCGDNKVIFRYDDPEFFVGYYGGQTWNGWDCVRVDKPTFDRLRKICEEQGGDLEDYDNAEADEFGLYSLDGHCTHVCGFTHKGIFVTNPFQTECGRFDADPLKHYGLNLDEIIGIFGKDYEKLLS*
Ga0164294_1000272024F011649N/AMDESATESGSTIEKSKNGREIFTDKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFARRVETARKRHELSLLRDIELAGAKSWQAKAWMAERIYNHSQPSARLQVTQEHTHGISGNLAQLLAGIAGRKKAQVIDAEVIEEKPALPIRDNSYCATDGTQTIVTTTPGKIPRPRKVSMRRRKPRAESLAKYTTTPPAQPPATI*
Ga0164294_100027208F002826GGAMEVEAKDRLKWACDILLNARNRLAIERDRANHGHAIDIIQIIALVDAAALVCKEIAEEK*

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