Basic Information | |
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Taxon OID | 3300013006 Open in IMG/M |
Scaffold ID | Ga0164294_10002720 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15806 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (82.76%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002826 | Metagenome / Metatranscriptome | 527 | Y |
F011208 | Metagenome | 293 | N |
F011649 | Metagenome | 288 | Y |
F019469 | Metagenome | 229 | Y |
F073257 | Metagenome / Metatranscriptome | 120 | N |
F082352 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0164294_100027201 | F019469 | N/A | GAQIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMVHLWNVPVQELDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMPKLIEQIKSDDAKLVELGR* |
Ga0164294_1000272012 | F073257 | GGAGG | MNKVKFRWGEETYTLCVTQDDCWLEDGPSDISDRMLKGMDELAMENGMLPPKGLCAECWKGTYEAIVEDYHIGGETIKDLDLERCPRCRHTILPWQSVERVDKVLEALKKPVELCPTCRKSNTVEFTGDLKMDSVCKLNGEPFTAPNITRTQCPKCKDEFFFMSECEKIEAAIQAEQKRRGLK* |
Ga0164294_1000272019 | F011208 | AGGAG | MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWDKWRATNGKPAIKH |
Ga0164294_1000272022 | F082352 | AGGA | MSKIKTPDDCGDNKVIFRYDDPEFFVGYYGGQTWNGWDCVRVDKPTFDRLRKICEEQGGDLEDYDNAEADEFGLYSLDGHCTHVCGFTHKGIFVTNPFQTECGRFDADPLKHYGLNLDEIIGIFGKDYEKLLS* |
Ga0164294_1000272024 | F011649 | N/A | MDESATESGSTIEKSKNGREIFTDKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFARRVETARKRHELSLLRDIELAGAKSWQAKAWMAERIYNHSQPSARLQVTQEHTHGISGNLAQLLAGIAGRKKAQVIDAEVIEEKPALPIRDNSYCATDGTQTIVTTTPGKIPRPRKVSMRRRKPRAESLAKYTTTPPAQPPATI* |
Ga0164294_100027208 | F002826 | GGA | MEVEAKDRLKWACDILLNARNRLAIERDRANHGHAIDIIQIIALVDAAALVCKEIAEEK* |
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