Scaffold Ga0164294_10002720

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10002720
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15806
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F011208	Metagenome	293	N
F011649	Metagenome	288	Y
F019469	Metagenome	229	Y
F073257	Metagenome / Metatranscriptome	120	N
F082352	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100027201	F019469	N/A	GAQIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMVHLWNVPVQELDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMPKLIEQIKSDDAKLVELGR*
Ga0164294_1000272012	F073257	GGAGG	MNKVKFRWGEETYTLCVTQDDCWLEDGPSDISDRMLKGMDELAMENGMLPPKGLCAECWKGTYEAIVEDYHIGGETIKDLDLERCPRCRHTILPWQSVERVDKVLEALKKPVELCPTCRKSNTVEFTGDLKMDSVCKLNGEPFTAPNITRTQCPKCKDEFFFMSECEKIEAAIQAEQKRRGLK*
Ga0164294_1000272019	F011208	AGGAG	MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWDKWRATNGKPAIKH
Ga0164294_1000272022	F082352	AGGA	MSKIKTPDDCGDNKVIFRYDDPEFFVGYYGGQTWNGWDCVRVDKPTFDRLRKICEEQGGDLEDYDNAEADEFGLYSLDGHCTHVCGFTHKGIFVTNPFQTECGRFDADPLKHYGLNLDEIIGIFGKDYEKLLS*
Ga0164294_1000272024	F011649	N/A	MDESATESGSTIEKSKNGREIFTDKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFARRVETARKRHELSLLRDIELAGAKSWQAKAWMAERIYNHSQPSARLQVTQEHTHGISGNLAQLLAGIAGRKKAQVIDAEVIEEKPALPIRDNSYCATDGTQTIVTTTPGKIPRPRKVSMRRRKPRAESLAKYTTTPPAQPPATI*
Ga0164294_100027208	F002826	GGA	MEVEAKDRLKWACDILLNARNRLAIERDRANHGHAIDIIQIIALVDAAALVCKEIAEEK*