Scaffold Ga0164294_10002472

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10002472
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16676
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F018928	Metagenome / Metatranscriptome	232	Y
F032149	Metagenome	180	Y
F034566	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000247220	F032149	AGGA	MKNKIIILILSTISILVAINLFFASRLSQLSDLDLFDIEEDDL*
Ga0164294_1000247227	F018928	AGGGGG	MLIKSLNTMEKIVFKNKNLIWQGWDVIDLKESKTAKTSPAGIRVKDKWYLHKVYSPSRNGWDIPNKYRD*
Ga0164294_100024724	F034566	AGG	MSIKIKTIIWVQTALILILGLSMLFIGGDLKQTRKMTLDQSNFCIKYTSDIIASSRLDLIREQDAHNRNIDRANTVISDIVERYNVLIGRYNKSTGGYNYDPLNQYSYKIMRTVP*
Ga0164294_100024726	F004475	GAGG	MSNWTEELSDEHKEQIWHFIVETVKEIREQIAVDIEGTSDLWKAKGLNKSRRTSKAFKISAAIARGQNEI*