Scaffold Ga0164294_10002298

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10002298
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17321
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F005737	Metagenome	391	Y
F035727	Metagenome	171	Y
F069850	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000229818	F035727	N/A	MNHEHRKIANSILARLKDGEQFSQSAIDQALRDTGDLAPIGSAGVDQAVQEESDGGGESRGMGMVAANLIRLSEKTWSKSSDRIAETNEQ*
Ga0164294_1000229825	F069850	AGGAG	MVISQISNTVQVATFVNVFYGIASLVTKTKKGYAVTLLDTDAEMIVSPVRIYPATMLDQAIAYAKKIANIKE*
Ga0164294_1000229828	F005737	AGGA	MFDIETYKKPTDWAQVALYVVSVAAIVVVALDLFVWRTSC*
Ga0164294_1000229843	F000961	N/A	MEIDPVKYGVLWQKVQDYERRFDQMETKIDKMEASIEKLVALANQGRGGFWVGMALVSAFSSAVGYVSHWMSKN*