Scaffold Ga0164294_10002034

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10002034
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18496
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (18.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083672	Metagenome / Metatranscriptome	112	Y
F085110	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000203423	F085110	GGA	MNPKLTMNQTTVEEAMIYAESLKGIPFRWYVNGELQTFTGDNAFWCENSPPPSAAEIIEKDKYIVCTGLPNLLRRVCGLTIPGLGPRIRGKYGDVYKKFPGGTTAWFAYLYQTKRAKKFDINARYPRGTLLMARYKAKDNGEKDQGHIAVVYDDVEETKTIKDQLIIHSTPTIDYKKRDSCKDHGSVKIESFNISNELFKWDKISYYKWVCLPEDWLLLD*
Ga0164294_100020348	F083672	N/A	MAGRPHRIRSIQSYVNHSDANSGLSMLKAGTPNKVGNTQWTWYPQKTQCAQGPLDFVNTQAYYKTLNWQLLGNNRPSFVPSPRQAYTSFPASRYPLGVRPSTFSGNYSLN*