Scaffold Ga0164294

Basic Information
Taxon OID	3300013006 Open in IMG/M
Scaffold ID	Ga0164294_10001423 Open in IMG/M
Source Dataset Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013006 Open in IMG/M

Scaffold ID

Ga0164294_10001423 Open in IMG/M

Source Dataset Name

Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22276
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (70.97%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22276

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (70.97%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.008

Long. (^o)

-89.701

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F004760	Metagenome / Metatranscriptome	424	N
F012569	Metagenome / Metatranscriptome	279	N
F031024	Metagenome / Metatranscriptome	183	N
F033721	Metagenome / Metatranscriptome	176	Y
F035221	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100014231	F031024	AGAAGG	MKRALVTQAFGDDWKKVLDLTRPRMEAYCQRHKIDFLALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDSDILIANDCDDMGDGVEMFCAFDEGAFLDRKYEMGKLASAFGAQIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQ
Ga0164294_1000142315	F002149	N/A	MTAIEYIEKSGVPEGMWHNLAEWFGWFEKQGMVGIVRDEDGIVGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLAERFGPRKRITFNRSGKPKEYDYMKFMRKAFR*
Ga0164294_1000142317	F000635	N/A	MTLSEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAELNLYPRLATSGTIPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQTANTDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA*
Ga0164294_1000142322	F012569	AGGA	MSRALDKFQGQYGFSVGSTGTATPGYWAIQMLTDTTFSAISGRYDGTLTGITIGSGNVIYGEFDSYTAGTGTVIGYKAG*
Ga0164294_1000142325	F004760	AGAAG	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAALRRKKYGE*
Ga0164294_100014233	F033721	GAGG	MRWIKKELDEDGKPEWAVYIDEAGEGNEEDWSHFDTYASRDEAVEACWNYTWEDYDKRDK
Ga0164294_100014239	F035221	GAG	MKAIIMIVVTVMLMASVMADDFDGGVYDSGYAVFSGGKGLGITSNGLIVDDGILKLTPKGCYSSCGDVYYGGDEIVTKTGFLYYGSNGTKVQVGDYYSGTAGSTYVFENDSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164294_10001423

Overview

Ecosystem & Geography

Associated Families

Sequences