Scaffold Ga0164294

Basic Information
Taxon OID	3300013006 Open in IMG/M
Scaffold ID	Ga0164294_10000940 Open in IMG/M
Source Dataset Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013006 Open in IMG/M

Scaffold ID

Ga0164294_10000940 Open in IMG/M

Source Dataset Name

Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27566
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (40.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

27566

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (40.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.008

Long. (^o)

-89.701

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F037078	Metagenome / Metatranscriptome	168	N
F056412	Metagenome / Metatranscriptome	137	N
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_100009401	F056412	N/A	MNKKLTKYEILIANLEKASADLKKASEESQKRLNESFAKYQEKVSVAHHNSMMVNEKQIEEII*
Ga0164294_1000094012	F080893	AGGAG	MNKTIKITQRNIFEGEMANPQNCAIARAIKRDMKGKLMSVSVLPSHVTLKIDNKMFFAKMPKIGASFIKRFDHRKSTNPFQLNLKFKKGYALV*
Ga0164294_1000094027	F009669	N/A	MLSKIFGANWRSSTSGVTTVIAITTAIAIHSDPSLVAFLPDIAEVYIIGISKLVAVVSGIVFALTVKDAAVTGGTVASTVEAEERIHTHGENI*
Ga0164294_1000094030	F010817	N/A	VTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIELNEDSGVKPYKDNFGNDLYIIDSEHLVYFGVLNSWLKEKVAQDNIIDKTIDKINN*
Ga0164294_100009405	F037078	AGGA	MKNKLNITKQSFGDTTAFLLEGGKGRITSFHNALYNWGATNGQLHDMGNGKAFYFYAQPEAVLHALVKIALHSLCNKINAKGMKGGLMSLAKIKAQGQFDEIIDGRFLRASVSNDTYGFGTITAEKPSDYCGAVSNGRD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164294_10000940

Overview

Ecosystem & Geography

Associated Families

Sequences