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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013006 Open in IMG/M |
| Scaffold ID | Ga0164294_10000708 Open in IMG/M |
| Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31590 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (87.76%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002301 | Metagenome / Metatranscriptome | 573 | Y |
| F023330 | Metagenome | 210 | Y |
| F028458 | Metagenome | 191 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0164294_1000070818 | F002301 | GAGG | VDYLEEYEQMVVAIAAEYQRKYPMTDQQDIQQVLWIWFVSHPVKYKEWSALPRKDKDKLIAKSLRNKAITYCEREKARTVGYELLDLYYYDASVIEAFLPSIIAESYEIPTKIKDLNFKFNKSEAANDGNNWLVLRSDIAAAYYKLSEAKQFILKVRFTVDNVDWSETAKELDTTPDGARMKVQRTIASLIRNLGGWKPQPDDDLVEADDEQRGE* |
| Ga0164294_1000070819 | F023330 | GAGG | MNNEENDVVKEIRELLHPTDYSHAMDLRGKSIGDVCICGGDVFHALVAFEQGEICFYFLDGECVNCGSMVTLPHPTGQEFD* |
| Ga0164294_1000070827 | F028458 | GGA | MAKVNKGTLAIGWCDNGNTDGKFTEGVVSVALQCANNGIELTHSMRVQGNQIGRQRQVLFDYWADHIKTDWLLWIDSDIVVNMEVVTKLWDTADKINRPVVSGTYFISKENEGTLAKPYPALFYDVDEFSIQHVHPLPDNELIKVDSAGFGFVLMHKSIIALMRKKFPDQSMFAEQENVGDRYVGEDIVFFRKMQAAGIPLHAHTGALVKHIKRFSLDYGYYALYWAHEHLKNKLNEQQG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |