Scaffold Ga0164294_10000685

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10000685
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32231
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (87.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000952	Metagenome / Metatranscriptome	822	Y
F016373	Metagenome	247	Y
F025009	Metagenome	203	Y
F037222	Metagenome	168	Y
F039983	Metagenome	162	Y
F047492	Metagenome	149	Y
F051781	Metagenome	143	Y
F088417	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000068513	F037222	GAGG	MDTTTPPPTSQSHLEWLETLAQTYAEMALAGGDQALKDGRRGYLIHRFKELEQDFPGITAIIHTKIRAMK*
Ga0164294_1000068514	F047492	AGG	MNIFEQGKTLFTQNEFNQALAEAKAEIMSVAVHTTKQAMYLERRACAQMLLDMADNEDEGAVCTALRNAAEEIINRIPAQRQ*
Ga0164294_1000068516	F025009	AGGA	MTPLKVKWFDGSKGKIGIAKVQTEDGDTEYRIGTVDGFLEHMDVQQVVAWGVWFPIEAGDALFPEEL*
Ga0164294_1000068520	F016373	AGGAG	MKTHLSYSKNGWSLIHQGSPLCDYKKTKAEVMEVVKFYKITLPNCTWNGDRGEFVVTDTIEETA*
Ga0164294_1000068526	F051781	GGCGG	MSKLNDIVKINAPTHMVRYAGLELNRKTKETLGRYVERPKRPNEVQASDNNLWQRGHYKTGDGDYTSQVPRAGSLRAFSLPSKGNRT*
Ga0164294_100006853	F039983	GAGG	MESHLSEELVKQVFFQSDEKRPDPLIADEVDIVQFAEKLELTLRPLIAAEEHKRCVTIVAHMNREVASALQNQRP*
Ga0164294_1000068532	F088417	GGAG	MAERIYIVHSAQGTRLVKANLRQQALSHIANSTFTVRVATQDDLVKQLTAGAKIEQYKAPDQAELIEESESPGN*
Ga0164294_1000068539	F000952	AGGAG	MATSDQEQKSVLVPQLKRMAMGEKLDGQSMKGSTAPTKQAGGLSQTKKK*