Scaffold Ga0164294_10000176

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10000176
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60688
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (61.02%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006586	Metagenome	369	Y
F008185	Metagenome / Metatranscriptome	337	Y
F086679	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000017651	F008185	AGGA	MPTLFRHAVNTEIGTTPVDVLQVDAGVRVTVIGLNLANVTDYDTAVVDVYVIDENSTQAHYVRGLSISPNSTAKIITQGEKLILPETAGIRIVSDTEDSIDAVISYVEIS*
Ga0164294_1000017657	F086679	AGGAG	MGRALKKDVNGVDVINTPAAAATGITCEFYDGSTNQVDGILIKQRGAKTYVVARIGTPGTLFTNTLVTGTPSAAGEMRIRGSTSGMLDANLVSIAKLTKRVATDFSGNRYKWFLENDSSADYIVLTAI*
Ga0164294_1000017658	F006586	N/A	MQIESDKDFIQLRNQFSVWRKRFSMFVHDVQQIEKIIDRHIQQHSKIMVMYRQTHNRSYLEKAQLEIDSINRTLATVEKLELMSMLSRG*