Scaffold Ga0164294_10000061

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10000061
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107651
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (23.97%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016038	Metagenome / Metatranscriptome	250	Y
F052416	Metagenome / Metatranscriptome	142	Y
F052418	Metagenome	142	Y
F065460	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000006114	F052418	N/A	VAEIKFIRRRPKAGAPATRRMLCTNCLPLLMSPEGRLALNYRRAINQPKYNPNLKNLLITWDIFMQDYRCINMIACDMINVIPANKTFWKYFNDKLSLMQTLDKVRFMNS*
Ga0164294_1000006115	F016038	N/A	MPANIDLLPTQKSLIDLSELPKNSFNSVLYGYNLKSLLDDILLVRYVDETDDGTSILRNGIVVPINAETKAWRIGEIILCGPNSKHVKNGDHICFPNNLGIPIANIEVEGYGTLKKGLFLNEQRIFGIVTVRQDNESVASHIKKRSSK*
Ga0164294_1000006128	F065460	N/A	MKNFNEEYDQLLESFKSIRTVKRDFYPRNFKLSENFVKSFKTEYKRLIDEGHEPRKTLIRLSKALMFHALG*
Ga0164294_1000006173	F052416	AGG	MDLIDPRPITSPISGQPVRPVLKTFIRGNKEIVEAHYIDPASGVFIRKGLVSVKDIEPPKK*