Scaffold Ga0164292_10097641

Overview

Basic Information

• Taxon OID: 3300013005
• Scaffold ID: Ga0164292_10097641
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2219
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F019128	Metagenome / Metatranscriptome	231	Y
F058806	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164292_100976411	F019128	N/A	LVGSIATSLFLKQPEIAAGMAGYSGAKIGQALLGADSAIGALLAENSYAVSPSMYLQGYDTPGMAGEGIYASDYTLAGYDIPGL*
Ga0164292_100976412	F002259	N/A	MGMSAQDKMITVANRLGLTSLKDMQGTTRMVYDSITTAALTHTFFKGAAQRVFPLTNVGANGNQFQVDEALLVEKIGFFIPTDATGATYLGLVGNSVKFDLVIGNKTVIKDATCEFGGEQAFYNDGTVGSSVIDLEGVGILIPPQVEYYVVAKTFNTQTRVATSNRLGCYLFGTGALLNFNTTI*
Ga0164292_100976415	F058806	N/A	MSWQIPTLIEQDIKNGKAQYRTFQTGSGGQSILPVPSNSYVVIFGYDFSPSGFGIRASSSDLDILTNLLSPYGTQQISFYTGTDFYPFIHHVDVDINFIFDPLTAAVFYQGNVM