Scaffold Ga0164292_10079314

Overview

Basic Information

• Taxon OID: 3300013005
• Scaffold ID: Ga0164292_10079314
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2512
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050949	Metagenome	144	N
F054034	Metagenome	140	N
F067472	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164292_100793146	F054034	N/A	MLTISTFKKLEGLALKDGLKVESIFEFNERYSIWLSDGTNIEIERNRHWKGGNYTYYKMYIAGGTSAMTEFIMVQTINTLDRMVKHLIYIHEKYINK*
Ga0164292_100793147	F050949	GGA	MLTIENRGRLISDSFYDKTGMYWVVDKIIDDTNEYLILIENRKGPKEIFALNKQNLYGIGYEFGISAGGPGMQRMYKVKTYIPIETISDKRLLIKRMTEMIDTSYDI*
Ga0164292_100793148	F067472	N/A	MLTIDNIQNIEGKEFQLSSGQKYVIGICRAYYDHYSFGVFPLAVNGVAIINDGIIYKLMRTIKNSRGYHLTNSLGPNIAFVPKQNLTLKNFILELHIQTGLLNAYNRK*